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Exploring SARS-CoV-2 Delta variant spike protein receptor-binding domain (RBD) as a target for tanshinones and antimalarials
Coghi, Paolo1; Yun, Xiao Yun2; Ng, Jerome P.L.2; Law, Betty Yuan Kwan2; Memo, Maurizio3; Gianoncelli, Alessandra3; Wong, Vincent Kam Wai2; Ribaudo, Giovanni3
2022
Source PublicationNatural Product Research
ISSN1478-6419
Volume36Issue:23Pages:6150-6155
Abstract

The interaction of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) receptor-binding domain (RBD) of spike protein with angiotensin-converting enzyme 2 (ACE2) mediates cell invasion. While this interaction mechanism is conserved, the RBD is affected by amino acid mutations in variants such as Delta and Omicron, resulting in enhanced transmissibility and altered ligand binding. Tanshinones are currently investigated as multi-target antiviral agents, but the studies were limited to the original SARS-CoV-2. This study aims at investigating the interaction of tanshinones with the Delta RBD. Chloroquine, methylene blue and pyronaridine, antimalarials previously identified as SARS-CoV-2 RBD binders, were studied for reference. Docking indicated the best scores for tanshinones, while bio-layer interferometry and molecular dynamics highlighted methylene blue as the best Delta RBD binder, although with decreased affinity with respect to the original strain.

KeywordBio-layer Interferometry Delta Variant Rbd Sars-cov-2 Spike Protein Tanshinones
DOI10.1080/14786419.2022.2057492
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaChemistry ; Pharmacology & Pharmacy
WOS SubjectChemistry, Applied ; Chemistry, Medicinal
WOS IDWOS:000773150600001
Scopus ID2-s2.0-85127340673
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Citation statistics
Document TypeJournal article
CollectionUniversity of Macau
Corresponding AuthorWong, Vincent Kam Wai; Ribaudo, Giovanni
Affiliation1.School of Pharmacy, Macau University of Science and Technology, Taipa, Macao
2.Neher’s Biophysics Laboratory for Innovative Drug Discovery, State Key Laboratory of Quality Research in Chinese Medicine, Macau University of Science and Technology, Taipa, Macao
3.Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy
First Author AffilicationUniversity of Macau
Corresponding Author AffilicationUniversity of Macau
Recommended Citation
GB/T 7714
Coghi, Paolo,Yun, Xiao Yun,Ng, Jerome P.L.,et al. Exploring SARS-CoV-2 Delta variant spike protein receptor-binding domain (RBD) as a target for tanshinones and antimalarials[J]. Natural Product Research, 2022, 36(23), 6150-6155.
APA Coghi, Paolo., Yun, Xiao Yun., Ng, Jerome P.L.., Law, Betty Yuan Kwan., Memo, Maurizio., Gianoncelli, Alessandra., Wong, Vincent Kam Wai., & Ribaudo, Giovanni (2022). Exploring SARS-CoV-2 Delta variant spike protein receptor-binding domain (RBD) as a target for tanshinones and antimalarials. Natural Product Research, 36(23), 6150-6155.
MLA Coghi, Paolo,et al."Exploring SARS-CoV-2 Delta variant spike protein receptor-binding domain (RBD) as a target for tanshinones and antimalarials".Natural Product Research 36.23(2022):6150-6155.
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