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Bacterial diversity and the antimicrobial resistome in the southwestern highlands of Saudi Arabia
Yasir, Muhammad1,2; Khan, Raees3; Ullah, Riaz1; Bibi, Fehmida1,2; Khan, Imran1,4; Mustafa Karim, Asad5; Al-Ghamdi, Ahmed K.2; Azhar, Esam I.1,2
2022-04-04
Source PublicationSaudi Journal of Biological Sciences
ISSN1319-562X
Volume29Issue:4Pages:2138-2147
Abstract

Soil is a reservoir of microbial diversity and the most supportive habitat for acquiring and transmitting antimicrobial resistance. Resistance transfer usually occurs from animal to soil and vice versa, and it may ultimately appear in clinical pathogens. In this study, the southwestern highlands of Saudi Arabia were studied to assess the bacterial diversity and antimicrobial resistance that could be affected by the continuous development of tourism in the region. Such effects could have a long-lasting impact on the local environment and community. Culture-dependent, quantitative polymerase chain reaction (qPCR), and shotgun sequencing-based metagenomic approaches were used to evaluate the diversity, functional capabilities, and antimicrobial resistance of bacteria isolated from collected soil samples. Bacterial communities in the southwestern highlands were mainly composed of Proteobacteria, Bacteroidetes, and Actinobacteria. A total of 102 antimicrobial resistance genes (ARGs) and variants were identified in the soil microbiota and were mainly associated with multidrug resistance, followed by macrolide, tetracycline, glycopeptide, bacitracin, and beta-lactam antibiotic resistance. The mechanisms of resistance included efflux, antibiotic target alteration, and antibiotic inactivation. qPCR confirmed the detection of 18 clinically important ARGs. In addition, half of the 49 identified isolates were phenotypically resistant to at least one of the 15 antibiotics tested. Overall, ARGs and indicator genes of anthropogenic activities (human-mitochondrial [hmt] gene and integron-integrase [int1]) were found in relatively lower abundance. Along with a high diversity of bacterial communities, variation was observed in the relative abundance of bacterial taxa among sampling sites in the southwestern highlands of Saudi Arabia.

KeywordBacterial Diversity Highlands Metagenomics Saudi Arabia Soil Resistome
DOI10.1016/j.sjbs.2021.11.047
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaLife Sciences & Biomedicine - Other Topics
WOS SubjectBiology
WOS IDWOS:000798983400021
PublisherELSEVIERRADARWEG 29, 1043 NX AMSTERDAM, NETHERLANDS
Scopus ID2-s2.0-85120749211
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Document TypeJournal article
CollectionUniversity of Macau
Corresponding AuthorYasir, Muhammad
Affiliation1.Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah 21589, Saudi Arabia
2.Medical Laboratory Technology Department, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia
3.Department of Biological Sciences, National University of Medical Sciences, Rawalpindi, Pakistan
4.State Key Laboratory of Quality Research in Chinese Medicine, Macau University of Science and Technology, Macau S.A.R
5.Department of Bioscience and Biotechnology, The University of Suwon, Hwaseong City, Gyeonggi-do, Republic of Korea
Recommended Citation
GB/T 7714
Yasir, Muhammad,Khan, Raees,Ullah, Riaz,et al. Bacterial diversity and the antimicrobial resistome in the southwestern highlands of Saudi Arabia[J]. Saudi Journal of Biological Sciences, 2022, 29(4), 2138-2147.
APA Yasir, Muhammad., Khan, Raees., Ullah, Riaz., Bibi, Fehmida., Khan, Imran., Mustafa Karim, Asad., Al-Ghamdi, Ahmed K.., & Azhar, Esam I. (2022). Bacterial diversity and the antimicrobial resistome in the southwestern highlands of Saudi Arabia. Saudi Journal of Biological Sciences, 29(4), 2138-2147.
MLA Yasir, Muhammad,et al."Bacterial diversity and the antimicrobial resistome in the southwestern highlands of Saudi Arabia".Saudi Journal of Biological Sciences 29.4(2022):2138-2147.
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