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Discrimination between Carbapenem-Resistant and Carbapenem-Sensitive Klebsiella pneumoniae Strains through Computational Analysis of Surface-Enhanced Raman Spectra: A Pilot Study
Liu, Wei1; Tang, Jia Wei1; Lyu, Jing Wen2; Wang, Jun Jiao1; Pan, Ya Cheng3; Shi, Xin Yi3; Liu, Qing Hua4; Zhang, Xiao1; Gu, Bing3,5; Wang, Liang1
2022-02-01
Source PublicationMicrobiology Spectrum
Volume10Issue:1
Abstract

In clinical settings, rapid and accurate diagnosis of antibiotic resistance is essential for the efficient treatment of bacterial infections. Conventional methods for antibiotic resistance testing are time consuming, while molecular methods such as PCR-based testing might not accurately reflect phenotypic resistance. Thus, fast and accurate methods for the analysis of bacterial antibiotic resistance are in high demand for clinical applications. In this pilot study, we isolated 7 carbapenem-sensitive Klebsiella pneumoniae (CSKP) strains and 8 carbapenem-resistant Klebsiella pneumoniae (CRKP) strains from clinical samples. Surface-enhanced Raman spectroscopy (SERS) as a label-free and noninvasive method was employed for discriminating CSKP strains from CRKP strains through computational analysis. Eight supervised machine learning algorithms were applied for sample analysis. According to the results, all supervised machine learning methods could successfully predict carbapenem sensitivity and resistance in K. pneumoniae, with a convolutional neural network (CNN) algorithm on top of all other methods. Taken together, this pilot study confirmed the application potentials of surface- enhanced Raman spectroscopy in fast and accurate discrimination of Klebsiella pneumoniae strains with different antibiotic resistance profiles.

KeywordAntibiotic Resistance Profile Carbapenems Klebsiella Pneumoniae Machine Learning Algorithm Surface-enhanced Raman Spectroscopy
DOI10.1128/spectrum.02409-21
URLView the original
Language英語English
Scopus ID2-s2.0-85124318119
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Document TypeJournal article
CollectionUniversity of Macau
Affiliation1.Department of Bioinformatics, School of Medical Informatics and Engineering, Xuzhou Medical University, Xuzhou, Jiangsu, China
2.Medical Technology School, Xuzhou Medical University, Xuzhou, Jiangsu, China
3.School of Life Sciences, Xuzhou Medical University, Xuzhou, Jiangsu, China
4.State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology, Taipa, Macao
5.Laboratory Medicine, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China
Recommended Citation
GB/T 7714
Liu, Wei,Tang, Jia Wei,Lyu, Jing Wen,et al. Discrimination between Carbapenem-Resistant and Carbapenem-Sensitive Klebsiella pneumoniae Strains through Computational Analysis of Surface-Enhanced Raman Spectra: A Pilot Study[J]. Microbiology Spectrum, 2022, 10(1).
APA Liu, Wei., Tang, Jia Wei., Lyu, Jing Wen., Wang, Jun Jiao., Pan, Ya Cheng., Shi, Xin Yi., Liu, Qing Hua., Zhang, Xiao., Gu, Bing., & Wang, Liang (2022). Discrimination between Carbapenem-Resistant and Carbapenem-Sensitive Klebsiella pneumoniae Strains through Computational Analysis of Surface-Enhanced Raman Spectra: A Pilot Study. Microbiology Spectrum, 10(1).
MLA Liu, Wei,et al."Discrimination between Carbapenem-Resistant and Carbapenem-Sensitive Klebsiella pneumoniae Strains through Computational Analysis of Surface-Enhanced Raman Spectra: A Pilot Study".Microbiology Spectrum 10.1(2022).
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