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Revisiting Embedding Based Graph Analyses: Hyperparameters Matter!
Yang, Dingqi1; Qu, Bingqing2; Hussein, Rana3; Rosso, Paolo3; Cudre-Mauroux, Philippe3; Liu, Jie4
2023-11
Source PublicationIEEE Transactions on Knowledge and Data Engineering
ISSN1041-4347
Volume35Issue:11Pages:11830-11845
Abstract

Graph embeddings have been widely used for many graph analysis tasks. Mainstream factorization-based and graph-sampling-based embedding learning schemes both involve many hyperparameters and design choices. However, existing techniques often adopt some heuristics for these hyperparameters and design choices with little investigation into their impact, making it unclear what is the exact performance gains of these techniques on graph analysis tasks. Against this background, this paper presents a systematic study on the impact of an extensive list of hyperparameters for both factorization-based and graph-sampling-based graph embedding techniques for homogeneous graphs. We design generalized factorization-based and graph-sampling-based techniques involving these hyperparameters, and conduct a comprehensive set of experiments with over 3,000 embedding models trained and evaluated per dataset. We reveal that much of the performance gains are indeed due to optimal hyperparameter settings/design choices rather than the sophistication of embedding models; appropriate hyperparameter settings for typical embedding techniques can outperform a sizeable collection of 18 state-of-the-art graph embedding techniques by 0.30-35.41% across different tasks. Moreover, we find that there is no one-size-fits-all hyperparameter setting across tasks, but we can indeed provide a list of task-specific practical recommendations for these hyperparameter settings/design choices, which we believe can serve as important guidelines for future research on embedding based graph analyses.

KeywordGraph Analysis Graph Embedding Homogeneous Graph Matrix Factorization Network Representation Random Walk
DOI10.1109/TKDE.2022.3230743
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaComputer Science ; Engineering
WOS SubjectComputer Science, Artificial Intelligence ; Computer Science, Information Systems ; Engineering, Electrical & Electronic
WOS IDWOS:001089176900060
PublisherIEEE COMPUTER SOC, 10662 LOS VAQUEROS CIRCLE, PO BOX 3014, LOS ALAMITOS, CA 90720-1314
Scopus ID2-s2.0-85146257191
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Citation statistics
Document TypeJournal article
CollectionDEPARTMENT OF COMPUTER AND INFORMATION SCIENCE
THE STATE KEY LABORATORY OF INTERNET OF THINGS FOR SMART CITY (UNIVERSITY OF MACAU)
Corresponding AuthorYang, Dingqi
Affiliation1.University of Macau, State Key Laboratory of Internet of Things for Smart City, The Department of Computer and Information Science, 999078, Macao
2.BNU-HKBU United International College, Zhuhai, 519088, China
3.University of Fribourg, Department of Informatics, Fribourg, 1700, Switzerland
4.Harbin Institute of Technology, Harbin, 150001, China
First Author AffilicationUniversity of Macau
Corresponding Author AffilicationUniversity of Macau
Recommended Citation
GB/T 7714
Yang, Dingqi,Qu, Bingqing,Hussein, Rana,et al. Revisiting Embedding Based Graph Analyses: Hyperparameters Matter![J]. IEEE Transactions on Knowledge and Data Engineering, 2023, 35(11), 11830-11845.
APA Yang, Dingqi., Qu, Bingqing., Hussein, Rana., Rosso, Paolo., Cudre-Mauroux, Philippe., & Liu, Jie (2023). Revisiting Embedding Based Graph Analyses: Hyperparameters Matter!. IEEE Transactions on Knowledge and Data Engineering, 35(11), 11830-11845.
MLA Yang, Dingqi,et al."Revisiting Embedding Based Graph Analyses: Hyperparameters Matter!".IEEE Transactions on Knowledge and Data Engineering 35.11(2023):11830-11845.
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