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Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2
Rao, Xia1,2,3; Zhao, Runchu4,5; Tong, Zhou4,6; Guo, Shuxin7; Peng, Weiyu8; Liu, Kefang4; Li, Shihua4; Wu, Lili4; Tong, Jianyu6; Chai, Yan4; Han, Pu4; Wang, Feiran4,9; Jia, Peng4; Li, Zhaohui4; Zhao, Xin4; Li, Dedong4; Zhang, Rong4,10; Zhang, Xue11; Zou, Weiwei11; Li, Weiwei4; Wang, Qihui3,4; Gao, George Fu1,2,4; Wu, Yan11; Dai, Lianpan3,4; Gao, Feng1
2023-12-18
Source PublicationProceedings of the National Academy of Sciences of the United States of America
ISSN0027-8424
Volume120Issue:52Pages:e2314193120
Abstract

Currently, monoclonal antibodies (MAbs) targeting the SARS-CoV-2 receptor binding domain (RBD) of spike (S) protein are classified into seven classes based on their binding epitopes. However, most of these antibodies are seriously impaired by SARS-CoV-2 Omicron and its subvariants, especially the recent BQ.1.1, XBB and its derivatives. Identification of broadly neutralizing MAbs against currently circulating variants is imperative. In this study, we identified a "breathing" cryptic epitope in the S protein, named as RBD-8. Two human MAbs, BIOLS56 and IMCAS74, were isolated recognizing this epitope with broad neutralization abilities against tested sarbecoviruses, including SARS-CoV, pangolin-origin coronaviruses, and all the SARS-CoV-2 variants tested (Omicron BA.4/BA.5, BQ.1.1, and XBB subvariants). Searching through the literature, some more RBD-8 MAbs were defined. More importantly, BIOLS56 rescues the immune-evaded antibody, RBD-5 MAb IMCAS-L4.65, by making a bispecific MAb, to neutralize BQ.1 and BQ.1.1, thereby producing an MAb to cover all the currently circulating Omicron subvariants. Structural analysis reveals that the neutralization effect of RBD-8 antibodies depends on the extent of epitope exposure, which is affected by the angle of antibody binding and the number of up-RBDs induced by angiotensin-converting enzyme 2 binding. This cryptic epitope which recognizes non- receptor binding motif (non-RBM) provides guidance for the development of universal therapeutic antibodies and vaccines against COVID-19.

KeywordCryptic Epitope Neutralizing Antibody Omicron Ba.4/ba.5/bq.1.1/xbb Subvariant Rbd-8 Sars-cov-2
DOI10.1073/pnas.2314193120
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:001146713500001
PublisherNATL ACAD SCIENCES, 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418
Scopus ID2-s2.0-85180385401
Fulltext Access
Citation statistics
Document TypeJournal article
CollectionUniversity of Macau
Faculty of Health Sciences
Co-First AuthorRao, Xia; Zhao, Runchu
Corresponding AuthorGao, George Fu; Gao, Feng
Affiliation1.Laboratory of Protein Engineering and Vaccines, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 300308, China
2.Research Network of Immunity and Health, Beijing Institutes of Life Science, Chinese Academy of Sciences, 100101, China
3.University of Chinese Academy of Sciences, 100049, China
4.Chinese Academy of Sciences Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, 100101, China
5.Institute of Physical Science and Information, Anhui University, Hefei, 230039, China
6.Shanxi Academy of Advanced Research and Innovation, Taiyuan, 030032, China
7.Faculty of Health Sciences, University of Macau, Macau Special Administrative Region 999078, China
8.Institute of Pediatrics, Shenzhen Children's Hospital, Shenzhen, 518038, China
9.School of Life Sciences, University of Science and Technology of China, Hefei, 230026, China
10.Laboratory of Animal Infectious Diseases, College of Animal Sciences and Veterinary Medicine, Guangxi University, Nanning, 530004, China
11.Department of Pathogen Microbiology, School of Basic Medical Sciences, Capital Medical University, 100069, China
Recommended Citation
GB/T 7714
Rao, Xia,Zhao, Runchu,Tong, Zhou,et al. Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2[J]. Proceedings of the National Academy of Sciences of the United States of America, 2023, 120(52), e2314193120.
APA Rao, Xia., Zhao, Runchu., Tong, Zhou., Guo, Shuxin., Peng, Weiyu., Liu, Kefang., Li, Shihua., Wu, Lili., Tong, Jianyu., Chai, Yan., Han, Pu., Wang, Feiran., Jia, Peng., Li, Zhaohui., Zhao, Xin., Li, Dedong., Zhang, Rong., Zhang, Xue., Zou, Weiwei., ...& Gao, Feng (2023). Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America, 120(52), e2314193120.
MLA Rao, Xia,et al."Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2".Proceedings of the National Academy of Sciences of the United States of America 120.52(2023):e2314193120.
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