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An effective strategy for identifying autogenous regulation of transcription factors in filamentous fungi
Qin, Longguang1; Guo, Shuhui1; Li, Ang1; Fan, Lu1; Tan, Kaeling1,2; Wong, Koon Ho1,3,4
2023-11-06
Source PublicationMicrobiology spectrum
ISSN2165-0497
Volume11Issue:6Pages:e02347-23
Abstract

Transcription factors (TFs) play a crucial role in regulating gene expression in living organisms, and any malfunction in their functions can lead to severe physiological consequences. The regulation of TFs occurs at multiple levels, with autogenous regulation being a common mode of regulation where the expression of a TF gene is dependent on its own function. Although bioinformatics analysis of promoter sequences is frequently used to predict autogenous regulation events, it is not entirely reliable. In this study, we present a simple yet effective strategy to identify the autogenous regulation of a TF. We have demonstrated the effectiveness of this method on three fungal TFs (the Carbon Catabolite Repressor CreA and two uncharacterized TFs of secondary metabolism) and have generated a set of plasmids to facilitate the construction of experimental strains in fungi. Our method can be applied to both positive and negative-acting TFs and generalized for other organisms. Hence, this work provides a reliable and straightforward method for identifying autogenous regulation events, which is useful for understanding TFs’ functions.

KeywordAutogenous Regulation Gene Regulation Transcription Factors
DOI10.1128/spectrum.02347-23
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaMicrobiology
WOS SubjectMicrobiology
WOS IDWOS:001095469800001
PublisherAMER SOC MICROBIOLOGY, 1752 N ST NW, WASHINGTON, DC 20036-2904
Scopus ID2-s2.0-85180007572
Fulltext Access
Citation statistics
Document TypeJournal article
CollectionMinistry of Education Frontiers Science Center for Precision Oncology, University of Macau
Faculty of Health Sciences
Institute of Translational Medicine
Genomics, Bioinformatics and Single Cell Analysis Core
Corresponding AuthorWong, Koon Ho
Affiliation1.Faculty of Health Sciences, University of Macau, Avenida da Universidade , Taipa, Macau, China
2.Gene Expression, Genomics and Bioinformatics core, Faculty of Health Sciences, University of Macau, Avenida da Universidade , Taipa, Macau, China
3.Institute of Translational Medicine, Faculty of Health Sciences, University of Macau, Avenida da Universidade , Taipa, Macau, China
4.MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa, Macau, China
First Author AffilicationFaculty of Health Sciences
Corresponding Author AffilicationFaculty of Health Sciences;  University of Macau
Recommended Citation
GB/T 7714
Qin, Longguang,Guo, Shuhui,Li, Ang,et al. An effective strategy for identifying autogenous regulation of transcription factors in filamentous fungi[J]. Microbiology spectrum, 2023, 11(6), e02347-23.
APA Qin, Longguang., Guo, Shuhui., Li, Ang., Fan, Lu., Tan, Kaeling., & Wong, Koon Ho (2023). An effective strategy for identifying autogenous regulation of transcription factors in filamentous fungi. Microbiology spectrum, 11(6), e02347-23.
MLA Qin, Longguang,et al."An effective strategy for identifying autogenous regulation of transcription factors in filamentous fungi".Microbiology spectrum 11.6(2023):e02347-23.
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