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Optimization of the OPLS-AA force field for long hydrocarbons
Siu S.W.I.; Pluhackova K.; Böckmann R.A.
2012
Source PublicationJournal of Chemical Theory and Computation
ISSN15499618
Volume8Issue:4Pages:1459
Abstract

The all-atom optimized potentials for liquid simulations (OPLS-AA) force field is a popular force field for simulating biomolecules. However, the current OPLS parameters for hydrocarbons developed using short alkanes cannot reproduce the liquid properties of long alkanes in molecular dynamics simulations. Therefore, the extension of OPLS-AA to (phospho)lipid molecules required for the study of biological membranes was hampered in the past. Here, we optimized the OPLS-AA force field for both short and long hydrocarbons. Following the framework of the OPLS-AA parametrization, we refined the torsional parameters for hydrocarbons by fitting to the gas-phase ab initio energy profiles calculated at the accurate MP2/aug-cc-pVTZ theory level. Additionally, the depth of the Lennard-Jones potential for methylene hydrogen atoms was adjusted to reproduce the densities and the heats of vaporization of alkanes and alkenes of different lengths. Optimization of partial charges finally allowed to reproduce the gel-to-liquid-phase transition temperature for pentadecane and solvation free energies. It is shown that the optimized parameter set (L-OPLS) yields improved hydrocarbon diffusion coefficients, viscosities, and gauche-trans ratios. Moreover, its applicability for lipid bilayer simulations is shown for a GMO bilayer in its liquid-crystalline phase. © 2012 American Chemical Society.

DOI10.1021/ct200908r
URLView the original
Indexed BySCIE
Language英語English
WOS IDWOS:000302487700031
The Source to ArticleScopus
Scopus ID2-s2.0-84859561660
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Cited Times [WOS]:473   [WOS Record]     [Related Records in WOS]
Document TypeJournal article
CollectionDEPARTMENT OF COMPUTER AND INFORMATION SCIENCE
Corresponding AuthorSiu S.W.I.
AffiliationComputational Biology, Department of Biology, Universitat Erlangen-Nu ̈ ̈ rnberg, Erlangen, Germany
Recommended Citation
GB/T 7714
Siu S.W.I.,Pluhackova K.,Böckmann R.A.. Optimization of the OPLS-AA force field for long hydrocarbons[J]. Journal of Chemical Theory and Computation, 2012, 8(4), 1459.
APA Siu S.W.I.., Pluhackova K.., & Böckmann R.A. (2012). Optimization of the OPLS-AA force field for long hydrocarbons. Journal of Chemical Theory and Computation, 8(4), 1459.
MLA Siu S.W.I.,et al."Optimization of the OPLS-AA force field for long hydrocarbons".Journal of Chemical Theory and Computation 8.4(2012):1459.
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