Residential College | false |
Status | 已發表Published |
Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor | |
Chen,Kelie1; Yang,Dexin1; Zhao,Fan1; Wang,Shengchao2; Ye,Yao3; Sun,Wenjie4; Lu,Haohua1; Ruan,Zhi5; Xu,Jinming6; Wang,Tianru7; Lu,Guang8; Wang,Liming8; Shi,Yu9; Zhang,Honghe4; Wu,Han10; Lu,Weiguo2; Shen,Han Ming8,11; Xia,Dajing1; Wu,Yihua1 | |
2020-07 | |
Source Publication | Database-The Journal of Biological Databases and Curation |
ABS Journal Level | 2 |
ISSN | 1758-0463 |
Volume | 2020Pages:baaa052 |
Abstract | Autophagy is an essential cellular process that is closely implicated in diverse pathophysiological processes and a variety of human diseases, especially tumors. Autophagy is regarded as not only an anti-cancer process in tumorigenesis but also a pro-tumor process in progression and metastasis according to current research. It means the role of autophagy in tumor is considered to be complex, controversial and context dependent. Hence, a comprehensive database is of great significance to obtain an in-depth understanding of such complex correlations between autophagy and tumor. To achieve this objective, here we developed the Autophagy and Tumor Database (named as ATdb, http://www.bigzju.com/ATdb/#/) to compile the published information concerning autophagy and tumor research. ATdb connected 25 types of tumors with 137 genes required for autophagy-related pathways, containing 219 population filters, 2650 hazard ratio trend plots, 658 interacting microRNAs, 266 interacting long non-coding RNAs, 155 post-translational modifications, 298 DNA methylation records, 331 animal models and 70 clinical trials. ATdb could enable users to search, browse, download and carry out efficient online analysis. For instance, users can make prediction of autophagy gene regulators in a context-dependent manner and in a precise subpopulation and tumor subtypes. Also, it is feasible in ATdb to cluster tumors into distinguished groups based on the gene-related long non-coding RNAs to gain novel insights into their potential functional implications. Thus, ATdb offers a powerful online database for the autophagy community to explore the complex world of autophagy and tumor. Database URL: http://www.bigzju.com/ATdb/#/ |
DOI | 10.1093/database/baaa052 |
URL | View the original |
Indexed By | SCIE |
Language | 英語English |
WOS Research Area | Mathematical & Computational Biology |
WOS Subject | Mathematical & Computational Biology |
WOS ID | WOS:000546001700001 |
Publisher | OXFORD UNIV PRESSGREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND |
Scopus ID | 2-s2.0-85088215426 |
Fulltext Access | |
Citation statistics | |
Document Type | Journal article |
Collection | Faculty of Health Sciences |
Corresponding Author | Shen,Han Ming; Xia,Dajing; Wu,Yihua |
Affiliation | 1.Department of Toxicology of School of Public Health,Department of Gynecologic Oncology of Women's Hospital,Zhejiang University,School of Medicine,Hangzhou,310058,China 2.Department of Gynecologic Oncology of Women's Hospital,Zhejiang University,School of Medicine,Hangzhou,310058,China 3.Department of Oncology,Second Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310058,China 4.Department of Pathology,Zhejiang University,School of Medicine,Hangzhou,310058,China 5.Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University,Hangzhou,310016,China 6.Department of Thoracic Surgery,The First Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310003,China 7.Epidemiology Stream,Dalla Lana School of Public Health,University of Toronto,M5T 3M7,Canada 8.Department of Physiology,Yong Loo Lin School of Medicine,National University of Singapore,Singapore,117597,Singapore 9.State Key Laboratory for Diagnosis and Treatment of Infectious Diseases,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Disease,The First Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310003,China 10.Second Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310009,China 11.Faculty of Health Sciences,University of Macau,Macao |
Corresponding Author Affilication | Faculty of Health Sciences |
Recommended Citation GB/T 7714 | Chen,Kelie,Yang,Dexin,Zhao,Fan,et al. Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor[J]. Database-The Journal of Biological Databases and Curation, 2020, 2020, baaa052. |
APA | Chen,Kelie., Yang,Dexin., Zhao,Fan., Wang,Shengchao., Ye,Yao., Sun,Wenjie., Lu,Haohua., Ruan,Zhi., Xu,Jinming., Wang,Tianru., Lu,Guang., Wang,Liming., Shi,Yu., Zhang,Honghe., Wu,Han., Lu,Weiguo., Shen,Han Ming., Xia,Dajing., & Wu,Yihua (2020). Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor. Database-The Journal of Biological Databases and Curation, 2020, baaa052. |
MLA | Chen,Kelie,et al."Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor".Database-The Journal of Biological Databases and Curation 2020(2020):baaa052. |
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