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Clip-to-release on amplification (CRoA): A novel DNA amplification enhancer on and off microfluidics
Shen,Ren1,2; Jia,Yanwei1,2,3; Mak,Pui In1,2; Martins,Rui P.1,2,4
2020-06-07
Source PublicationLab on a Chip
ISSN1473-0197
Volume20Issue:11Pages:1928-1938
Abstract

Despite its high sensitivity, low cost, and high efficiency as a DNA amplification indicator with a yes/no answer, dsDNA-binding dye encounters incompatibility when used in microfluidic systems, resulting in problems such as false negative amplification results. Besides, its inhibition of amplification at high concentrations hinders its application both on-chip and off-chip. In this study, we propose a novel DNA amplification enhancer to counteract the drawbacks of dsDNA-binding dyes. It acts as a temporary reservoir for the free-floating dyes in solution and releases them on demand during the amplification process. Through this clip-to-release on amplification mechanism, the enhancer lowered the background fluorescence of sample droplets before amplification, enhanced the signal-to-background ratio of positive samples, and eliminated the false negative signal of on-chip PCR. Moreover, the enhancer increased the off-chip polymerase chain reaction (PCR) efficiency, boosted the fluorescence signal up to 10-fold, and made less nonspecific amplification product. All the factors affecting the enhancer's performance are investigated in detail, including its structure and concentration, and the types of dsDNA-binding dye used in the reaction. Finally, we demonstrated the broad application of the proposed amplification enhancer in various DNA amplification systems, for various genes, and on various amplification platforms. It would reignite the utilization of dsDNA dyes for wider applications in DNA analysis both on-chip and off-chip.

DOI10.1039/d0lc00318b
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaBiochemistry & Molecular Biology ; Chemistry ; Science & Technology - Other Topics ; Instruments & Instrumentation
WOS SubjectBiochemical Research Methods ; Chemistry, Multidisciplinary ; Chemistry, Analytical ; Nanoscience & Nanotechnology ; Instruments & Instrumentation
WOS IDWOS:000539270500006
Scopus ID2-s2.0-85085903889
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Citation statistics
Document TypeJournal article
CollectionFaculty of Health Sciences
Faculty of Science and Technology
THE STATE KEY LABORATORY OF ANALOG AND MIXED-SIGNAL VLSI (UNIVERSITY OF MACAU)
INSTITUTE OF MICROELECTRONICS
DEPARTMENT OF ELECTRICAL AND COMPUTER ENGINEERING
Corresponding AuthorJia,Yanwei
Affiliation1.State-Key Laboratory of Analog and Mixed-Signal VLSI,Institute of Microelectronics,University of Macau,Macao
2.Faculty of Science and Technology - ECE,University of Macau,Macao
3.Faculty of Health Sciences,University of Macau,Macao
4.On Leave from Instituto Superior Técnico,Universidade de Lisboa,Portugal
First Author AffilicationUniversity of Macau;  Faculty of Science and Technology
Corresponding Author AffilicationUniversity of Macau;  Faculty of Science and Technology;  Faculty of Health Sciences
Recommended Citation
GB/T 7714
Shen,Ren,Jia,Yanwei,Mak,Pui In,et al. Clip-to-release on amplification (CRoA): A novel DNA amplification enhancer on and off microfluidics[J]. Lab on a Chip, 2020, 20(11), 1928-1938.
APA Shen,Ren., Jia,Yanwei., Mak,Pui In., & Martins,Rui P. (2020). Clip-to-release on amplification (CRoA): A novel DNA amplification enhancer on and off microfluidics. Lab on a Chip, 20(11), 1928-1938.
MLA Shen,Ren,et al."Clip-to-release on amplification (CRoA): A novel DNA amplification enhancer on and off microfluidics".Lab on a Chip 20.11(2020):1928-1938.
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