We consider high order finite difference methods for two-dimensional fractional differential equations with temporal Caputo and spatial Riemann-Liouville derivatives in this paper. We propose a scheme and show that it converges with second order in time and fourth order in space. The accuracy of our proposed method can be improved by Richardson extrapolation. Approximate solution is obtained by the generalized minimal residual (GMRES) method. A preconditioner is proposed to improve the efficiency for the implementation of the GMRES method. © 2015, Springer Science+Business Media New York.