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CD8+ T-Cell Epitope Variations Suggest a Potential Antigen HLA-A2 Binding Deficiency for Spike Protein of SARS-CoV-2
Qiu, Congling1,2,3; Xiao, Chanchan2,3; Wang, Zhigang1; Zhu, Guodong3,4; Mao, Lipeng2,3; Chen, Xiongfei5; Gao, Lijuan2,3; Deng, Jieping2,3; Su, Jun1; Su, Huanxing3,6; Fang, Evandro Fei3,7; Zhang, Zhang Jin3,8; Zhang, Jikai9; Xie, Caojun5; Yuan, Jun5; Luo, Oscar Junhong3,10; Huang, Li`an1; Wang, Pengcheng2,3; Chen, Guobing1,2,3
2022-01-18
Source PublicationFRONTIERS IN IMMUNOLOGY
ISSN1664-3224
Volume12Pages:764949
Other Abstract

We identified SARS-CoV-2 specific antigen epitopes by HLA-A2 binding affinity analysis and characterized their ability to activate T cells. As the pandemic continues, variations in SARS-CoV-2 virus strains have been found in many countries. In this study, we directly assess the immune response to SARS-CoV-2 epitope variants. We first predicted potential HLA-A*02:01-restricted CD8 T-cell epitopes of SARS-CoV-2. Using the T2 cell model, HLA-A*02:01-restricted T-cell epitopes were screened for their binding affinity and ability to activate T cells. Subsequently, we examined the identified epitope variations and analyzed their impact on immune response. Here, we identified specific HLA-A2-restricted T-cell epitopes in the spike protein of SARS-CoV-2. Seven epitope peptides were confirmed to bind with HLA-A*02:01 and potentially be presented by antigen-presenting cells to induce host immune responses. Tetramers containing these peptides could interact with specific CD8 T cells from convalescent COVID-19 patients, and one dominant epitope (n-Sp1) was defined. These epitopes could activate and generate epitope-specific T cells in vitro, and those activated T cells showed cytolytic activity toward target cells. Meanwhile, n-Sp1 epitope variant 5L>F significantly decreased the proportion of specific T-cell activation; n-Sp1 epitope 8L>V variant showed significantly reduced binding to HLA-A*02:01 and decreased proportion of n-Sp1-specific CD8 T cell, which potentially contributes to the immune escape of SARS-CoV-2. Our data indicate that the variation of a dominant epitope will cause the deficiency of HLA-A*02:01 binding and T-cell activation, which subsequently requires the formation of a new CD8 T-cell immune response in COVID-19 patients.

KeywordSars-cov-2 Cd8++++ T-cell Epitope Spike Protein Variations Antigen Presentation Deficiency
DOI10.3389/fimmu.2021.764949
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaImmunology
WOS SubjectImmunology
WOS IDWOS:000750586900001
Scopus ID2-s2.0-85123917755
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Citation statistics
Document TypeJournal article
CollectionInstitute of Chinese Medical Sciences
Corresponding AuthorWang, Pengcheng; Chen, Guobing
Affiliation1.Department of Neurology, Affiliated Huaqiao Hospital, Jinan University, Guangzhou, China
2.Department of Microbiology and Immunology, Institute of Geriatric Immunology, School of Medicine, Jinan University, Guangzhou, China
3.Guangdong-Hong Kong, Macau Great Bay Area Geroscience Joint Laboratory, Department of Microbiology and Immunology, Jinan University, Guangzhou, China
4.Department of Geriatrics, Guangzhou First People’s Hospital, School of Medicine, South China University of Technology, Guangzhou, China
5.Department of Primary Public Health, Guangzhou Center for Disease Control and Prevention, Guangzhou, China
6.State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao
7.Department of Clinical Molecular Biology, University of Oslo and Akershus University Hospital, Lørenskog, Norway
8.School of Chinese Medicine, Li Ka Shing (LKS) Faculty of Medicine, the University of Hong Kong, Hong Kong
9.Department of Biological Products and Materia Medica, Institute of Biologics and Pharmaceuticals Research, Guangzhou, China
10.Department of Systems Biomedical Sciences, School of Medicine, Jinan University, Guangzhou, China
Recommended Citation
GB/T 7714
Qiu, Congling,Xiao, Chanchan,Wang, Zhigang,et al. CD8+ T-Cell Epitope Variations Suggest a Potential Antigen HLA-A2 Binding Deficiency for Spike Protein of SARS-CoV-2[J]. FRONTIERS IN IMMUNOLOGY, 2022, 12, 764949.
APA Qiu, Congling., Xiao, Chanchan., Wang, Zhigang., Zhu, Guodong., Mao, Lipeng., Chen, Xiongfei., Gao, Lijuan., Deng, Jieping., Su, Jun., Su, Huanxing., Fang, Evandro Fei., Zhang, Zhang Jin., Zhang, Jikai., Xie, Caojun., Yuan, Jun., Luo, Oscar Junhong., Huang, Li`an., Wang, Pengcheng., & Chen, Guobing (2022). CD8+ T-Cell Epitope Variations Suggest a Potential Antigen HLA-A2 Binding Deficiency for Spike Protein of SARS-CoV-2. FRONTIERS IN IMMUNOLOGY, 12, 764949.
MLA Qiu, Congling,et al."CD8+ T-Cell Epitope Variations Suggest a Potential Antigen HLA-A2 Binding Deficiency for Spike Protein of SARS-CoV-2".FRONTIERS IN IMMUNOLOGY 12(2022):764949.
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