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Application of Arrayed CRISPR/cas9 Screen and its Data Analysis: A Systematic Review
Sun, Shixue; Chen, Chang; Huang, Chen; Zhang, Xiaohua Douglas
2019-01-21
Conference Name2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
Source PublicationProceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
Pages2549-2555
Conference Date2018/12/03-2018/12/06
Conference PlaceMadrid, Spain
Abstract

CRISPR has become a hot research area ever since its advent for its efficiency and specificity in editing almost every section of DNA sequences. Based on its function of gene perturbation, a variety of gene editing techniques have been developed to achieve different aims. The target locations of a DNA strain can be precisely broken and repaired, during which the genes can be removed, repaired, silenced, or activated. The high efficiency of CRISPR/Cas9 reagents preparation and the easiness of experiment conduction make it now a powerful tool of high-content screen. In a CRISPR mediated screen, the reagents targeting different genes can be transferred and cultured together as a pool or separately in arrayed microwells. With the development of new synthesis methods which deceases the cost of guide RNA library preparation, arrayed CRIPSR screen is becoming more feasible and is believed to play more important role in a varies of biological research areas for its gene editing specificity and variable phenotype measurements. So far, there are a number of experiments designed in arrayed strategy, however, to the best of our knowledge, there is not a review on these experiments and their data analysis methods. Thus, we designed this systematic review and performed meta-analysis for these studies. In this paper we review the research area, study design, method of transfer of guide RNAs, final measurement of readouts and data analysis methods.

KeywordApplication Arrayed Screen Crispr Statistical Analysis
DOI10.1109/BIBM.2018.8621522
URLView the original
Indexed ByCPCI-S
Language英語English
WOS Research AreaComputer Science ; Mathematical & Computational Biology
WOS SubjectComputer Science, Interdisciplinary Applications ; Mathematical & Computational Biology
WOS IDWOS:000458654000438
Scopus ID2-s2.0-85062554970
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Document TypeConference paper
CollectionFaculty of Health Sciences
Corresponding AuthorZhang, Xiaohua Douglas
AffiliationFaculty of Health Sciences, University of Macau, Taipa, Macao
First Author AffilicationFaculty of Health Sciences
Corresponding Author AffilicationFaculty of Health Sciences
Recommended Citation
GB/T 7714
Sun, Shixue,Chen, Chang,Huang, Chen,et al. Application of Arrayed CRISPR/cas9 Screen and its Data Analysis: A Systematic Review[C], 2019, 2549-2555.
APA Sun, Shixue., Chen, Chang., Huang, Chen., & Zhang, Xiaohua Douglas (2019). Application of Arrayed CRISPR/cas9 Screen and its Data Analysis: A Systematic Review. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018, 2549-2555.
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