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REIA: A database for cancer A-to-I RNA editing with interactive analysis
Zhu, Huimin1; Huang, Lu1; Liu, Songbin2; Dai, Zhiming3; Songyang, Zhou1; Weng, Zhihui4; Xiong, Yuanyan1
2022-03-14
Source PublicationInternational Journal of Biological Sciences
ISSN1449-2288
Volume18Issue:6Pages:2472-2483
Abstract

Epitranscriptomic changes caused by adenosine-to-inosine (A-to-I) RNA editing contribute to the pathogenesis of human cancers; however, only a small fraction of the millions editing sites detected so far has clear functionality. To facilitate more in-depth studies on the editing, this paper offers REIA (http://bioinfo-sysu.com/reia), an interactive web server that analyses and visualizes the association between human cancers and A-to-I RNA editing sites (RESs). As a comprehensive database, REIA curates not only 8,447,588 RESs from 9,895 patients across 34 cancers, where 33 are from TCGA and 1 from GEO, but also 13 different types of multi-omic data for the cancers. As an interactive server, REIA provides various options for the user to specify the interested sites, to browse their annotation/editing level/profile in cancer, and to compare the difference in multi-omic features between editing and non-editing groups. From the editing profiles, REIA further detects 658 peptides that are supported by mass spectrum data but not yet covered in any prior works.

KeywordA-to-i Rna Editing Cancer Database Interactive Analysis Multi-omics
DOI10.7150/ijbs.69458
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaBiochemistry & Molecular Biology ; Life Sciences & Biomedicine - Other Topics
WOS SubjectBiochemistry & Molecular Biology ; Biology
WOS IDWOS:000831182700017
PublisherIVYSPRING INT PUBL, PO BOX 4546, LAKE HAVEN, NSW 2263, AUSTRALIA
Scopus ID2-s2.0-85128113966
Fulltext Access
Citation statistics
Document TypeJournal article
CollectionFaculty of Health Sciences
Co-First AuthorZhu, Huimin; Huang, Lu; Liu, Songbin
Corresponding AuthorXiong, Yuanyan
Affiliation1.Key Laboratory of Gene Engineering of the Ministry of Education, Institute of Healthy Aging Research, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510006, China
2.School of Automation, Guangdong University of Technology, Guangzhou, 510006, China
3.School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, China
4.Faculty of Health Sciences, University of Macau, 999078, Macao
Recommended Citation
GB/T 7714
Zhu, Huimin,Huang, Lu,Liu, Songbin,et al. REIA: A database for cancer A-to-I RNA editing with interactive analysis[J]. International Journal of Biological Sciences, 2022, 18(6), 2472-2483.
APA Zhu, Huimin., Huang, Lu., Liu, Songbin., Dai, Zhiming., Songyang, Zhou., Weng, Zhihui., & Xiong, Yuanyan (2022). REIA: A database for cancer A-to-I RNA editing with interactive analysis. International Journal of Biological Sciences, 18(6), 2472-2483.
MLA Zhu, Huimin,et al."REIA: A database for cancer A-to-I RNA editing with interactive analysis".International Journal of Biological Sciences 18.6(2022):2472-2483.
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