Residential College | false |
Status | 已發表Published |
REIA: A database for cancer A-to-I RNA editing with interactive analysis | |
Zhu, Huimin1; Huang, Lu1; Liu, Songbin2; Dai, Zhiming3; Songyang, Zhou1; Weng, Zhihui4; Xiong, Yuanyan1 | |
2022-03-14 | |
Source Publication | International Journal of Biological Sciences |
ISSN | 1449-2288 |
Volume | 18Issue:6Pages:2472-2483 |
Abstract | Epitranscriptomic changes caused by adenosine-to-inosine (A-to-I) RNA editing contribute to the pathogenesis of human cancers; however, only a small fraction of the millions editing sites detected so far has clear functionality. To facilitate more in-depth studies on the editing, this paper offers REIA (http://bioinfo-sysu.com/reia), an interactive web server that analyses and visualizes the association between human cancers and A-to-I RNA editing sites (RESs). As a comprehensive database, REIA curates not only 8,447,588 RESs from 9,895 patients across 34 cancers, where 33 are from TCGA and 1 from GEO, but also 13 different types of multi-omic data for the cancers. As an interactive server, REIA provides various options for the user to specify the interested sites, to browse their annotation/editing level/profile in cancer, and to compare the difference in multi-omic features between editing and non-editing groups. From the editing profiles, REIA further detects 658 peptides that are supported by mass spectrum data but not yet covered in any prior works. |
Keyword | A-to-i Rna Editing Cancer Database Interactive Analysis Multi-omics |
DOI | 10.7150/ijbs.69458 |
URL | View the original |
Indexed By | SCIE |
Language | 英語English |
WOS Research Area | Biochemistry & Molecular Biology ; Life Sciences & Biomedicine - Other Topics |
WOS Subject | Biochemistry & Molecular Biology ; Biology |
WOS ID | WOS:000831182700017 |
Publisher | IVYSPRING INT PUBL, PO BOX 4546, LAKE HAVEN, NSW 2263, AUSTRALIA |
Scopus ID | 2-s2.0-85128113966 |
Fulltext Access | |
Citation statistics | |
Document Type | Journal article |
Collection | Faculty of Health Sciences |
Co-First Author | Zhu, Huimin; Huang, Lu; Liu, Songbin |
Corresponding Author | Xiong, Yuanyan |
Affiliation | 1.Key Laboratory of Gene Engineering of the Ministry of Education, Institute of Healthy Aging Research, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510006, China 2.School of Automation, Guangdong University of Technology, Guangzhou, 510006, China 3.School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, China 4.Faculty of Health Sciences, University of Macau, 999078, Macao |
Recommended Citation GB/T 7714 | Zhu, Huimin,Huang, Lu,Liu, Songbin,et al. REIA: A database for cancer A-to-I RNA editing with interactive analysis[J]. International Journal of Biological Sciences, 2022, 18(6), 2472-2483. |
APA | Zhu, Huimin., Huang, Lu., Liu, Songbin., Dai, Zhiming., Songyang, Zhou., Weng, Zhihui., & Xiong, Yuanyan (2022). REIA: A database for cancer A-to-I RNA editing with interactive analysis. International Journal of Biological Sciences, 18(6), 2472-2483. |
MLA | Zhu, Huimin,et al."REIA: A database for cancer A-to-I RNA editing with interactive analysis".International Journal of Biological Sciences 18.6(2022):2472-2483. |
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