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The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights Journal article
Shao, Changwei, Sun, Shuai, Liu, Kaiqiang, Wang, Jiahao, Li, Shuo, Liu, Qun, Deagle, Bruce E., Seim, Inge, Biscontin, Alberto, Wang, Qian, Liu, Xin, Kawaguchi, So, Liu, Yalin, Jarman, Simon, Wang, Yue, Wang, Hong Yan, Huang, Guodong, Hu, Jiang, Feng, Bo, De Pittà, Cristiano, Liu, Shanshan, Wang, Rui, Ma, Kailong, Ying, Yiping, Sales, Gabrielle, Sun, Tao, Wang, Xinliang, Zhang, Yaolei, Zhao, Yunxia, Pan, Shanshan, Hao, Xiancai, Wang, Yang, Xu, Jiakun, Yue, Bowen, Sun, Yanxu, Zhang, He, Xu, Mengyang, Liu, Yuyan, Jia, Xiaodong, Zhu, Jiancheng, Liu, Shufang, Ruan, Jue, Zhang, Guojie, Yang, Huanming, Xu, Xun, Wang, Jun, Zhao, Xianyong, Meyer, Bettina, Fan, Guangyi. The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights[J]. Cell, 2023, 186(6), 1279-1294.e19.
Authors:  Shao, Changwei;  Sun, Shuai;  Liu, Kaiqiang;  Wang, Jiahao;  Li, Shuo; et al.
Favorite | TC[WOS]:34 TC[Scopus]:36  IF:45.5/49.0 | Submit date：2023/04/03
Antarctic Krill (Euphausia Superba)  Chromosome-level Genome  Circadian Clock  Environmental Adaptation  Giant Genome Size  Population Demography  Population Differentiation  Repeat Expansions  
Comparative genomics provides insights into the aquatic adaptations of mammals Journal article
Yuan, Yuan, Zhang, Yaolei, Zhang, Peijun, Liu, Chang, Wang, Jiahao, Gao, Haiyu, Rus Hoelzel, A., Seim, Inge, Lv, Meiqi, Lin, Mingli, Dong, Lijun, Gao, Haoyang, Yang, Zixin, Caruso, Francesco, Lin, Wenzhi, Da Fonseca, Rute R., Wang, Ding, Wang, Xianyan, Rasmussen, Marianne H., Liu, Mingming, Zheng, Jinsong, Zhao, Liyuan, Campos, Paula F., Kang, Hui, Iversen, Maria, Song, Yue, Guo, Xinyu, Guo, Jiao, Qin, Yating, Pan, Shanshan, Xu, Qiwu, Meng, Lingfeng, Yunga, A., Liu, Shanshan, Ming-Yuen Lee, Simon, Liu, Xin, Xu, Xun, Yang, Huanming, Fan, Guangyi, Wang, Kun, Li, Songhai. Comparative genomics provides insights into the aquatic adaptations of mammals[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118(37), e2106080118.
Authors:  Yuan, Yuan;  Zhang, Yaolei;  Zhang, Peijun;  Liu, Chang;  Wang, Jiahao; et al.
Favorite | TC[WOS]:58 TC[Scopus]:57  IF:9.4/10.8 | Submit date：2021/12/08
Aquatic Adaptation  Comparative Genomics  Marine Mammals  
The White-Spotted Bamboo Shark Genome Reveals Chromosome Rearrangements and Fast-Evolving Immune Genes of Cartilaginous Fish Journal article
Zhang, Yaolei, Gao, Haoyang, Li, Hanbo, Guo, Jiao, Ouyang, Bingjie, Wang, Meiniang, Xu, Qiwu, Wang, Jiahao, Lv, Meiqi, Guo, Xinyu, Liu, Qun, Wei, Likun, Ren, Han, Xi, Yang, Guo, Yang, Ren, Bingzhao, Pan, Shanshan, Liu, Chuxin, Ding, Xiaoyan, Xiang, Haitao, Yu, Yingjia, Song, Yue, Meng, Lingfeng, Liu, Shanshan, Wang, Jun, Jiang, Yuan, Shi, Jiahai, Liu, Shiping, Sabir, Jamal S.M., Sabir, Mumdooh J., Khan, Muhummadh, Hajrah, Nahid H., Ming-Yuen Lee, Simon, Xu, Xun, Yang, Huanming, Wang, Jian, Fan, Guangyi, Yang, Naibo, Liu, Xin. The White-Spotted Bamboo Shark Genome Reveals Chromosome Rearrangements and Fast-Evolving Immune Genes of Cartilaginous Fish[J]. iScience, 2020, 23(11).
Authors:  Zhang, Yaolei;  Gao, Haoyang;  Li, Hanbo;  Guo, Jiao;  Ouyang, Bingjie; et al.
Favorite | TC[WOS]:29 TC[Scopus]:32  IF:4.6/5.0 | Submit date：2022/10/07
Biological Sciences  Evolutionary Biology  Genetics  Genomics  Phylogenetics  
An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species Journal article
Zhang,Peijun, Zhao,Yong, Li,Chang, Lin,Mingli, Dong,Lijun, Zhang,Rui, Liu,Mingzhong, Li,Kuan, Zhang,He, Liu,Xiaochuan, Zhang,Yaolei, Yuan,Yuan, Liu,Huan, Seim,Inge, Sun,Shuai, Du,Xiao, Chang,Yue, Li,Feida, Liu,Shanshan, Lee,Simon Ming Yuen, Wang,Kun, Wang,Ding, Wang,Xianyan, McGowen,Michael R., Jefferson,Thomas A., Olsen,Morten Tange, Stiller,Josefin, Zhang,Guojie, Xu,Xun, Yang,Huanming, Fan,Guangyi, Liu,Xin, Li,Songhai. An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species[J]. iScience, 2020, 23(10), 101640.
Authors:  Zhang,Peijun;  Zhao,Yong;  Li,Chang;  Lin,Mingli;  Dong,Lijun; et al.
Favorite | TC[WOS]:20 TC[Scopus]:24  IF:4.6/5.0 | Submit date：2021/03/01
Evolutionary Biology  Genetics  Genomics  
The Chromosome Level Genome and Genome-wide Association Study for the Agronomic Traits of Panax Notoginseng Journal article
Fan, Guangyi, Liu, Xiaochuan, Sun, Shuai, Shi, Chengcheng, Du, Xiao, Han, Kai, Yang, Binrui, Fu, Yuanyuan, Liu, Minghua, Seim, Inge, Zhang, He, Xu, Qiwu, Wang, Jiahao, Su, Xiaoshan, Shao, Libin, Zhu, Yuanfang, Shao, Yunchang, Zhao, Yunpeng, Wong, Andrew KC, Zhuang, Dennis, Chen, Wenbin, Zhang, Gengyun, Yang, Huanming, Xu, Xun, Tsui, Stephen Kwok Wing, Liu, Xin, Lee, Simon Ming Yue. The Chromosome Level Genome and Genome-wide Association Study for the Agronomic Traits of Panax Notoginseng[J]. iScience, 2020, 23(9), 101538.
Authors:  Fan, Guangyi;  Liu, Xiaochuan;  Sun, Shuai;  Shi, Chengcheng;  Du, Xiao; et al.
Favorite | TC[WOS]:33 TC[Scopus]:35  IF:4.6/5.0 | Submit date：2021/12/06
Complete Chloroplast Genomes of 14 Mangroves: Phylogenetic and Comparative Genomic Analyses Journal article
Shi,Chengcheng, Han,Kai, Li,Liangwei, Seim,Inge, Lee,Simon Ming Yuen, Xu,Xun, Yang,Huanming, Fan,Guangyi, Liu,Xin. Complete Chloroplast Genomes of 14 Mangroves: Phylogenetic and Comparative Genomic Analyses[J]. Biomed Research International, 2020, 2020, 8731857.
Authors:  Shi,Chengcheng;  Han,Kai;  Li,Liangwei;  Seim,Inge;  Lee,Simon Ming Yuen; et al.
Favorite | TC[WOS]:15 TC[Scopus]:16  IF:2.6/3.1 | Submit date：2021/03/01
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil Journal article
Yun-Peng Zhao, Guangyi Fan, Ping-Ping Yin, Shuai Sun, Ning Li, Xiaoning Hong, Gang Hu, He Zhang, Fu-Min Zhang, Jing-Dan Han, Ya-Jun Hao, Qiwu Xu, Xianwei Yang, Wenjie Xia, Wenbin Chen, Han-Yang Lin, Rui Zhang, Jiang Chen, Xiao-Ming Zheng, Simon Ming-Yuen Lee, Joongku Lee, Koichi Uehara, Jian Wang, Huanming Yang, Cheng-Xin Fu, Xin Liu, Xun Xu, Song Ge. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil[J]. NATURE COMMUNICATIONS, 2019, 10, 4201.
Authors:  Yun-Peng Zhao;  Guangyi Fan;  Ping-Ping Yin;  Shuai Sun;  Ning Li; et al.
Favorite | TC[WOS]:109 TC[Scopus]:123  IF:14.7/16.1 | Submit date：2020/01/16
The first chromosome‐level genome for a marine mammal as a resource to study ecology and evolution Journal article
Guangyi Fan, Yaolei Zhang, Xiaochuan Liu, Jiahao Wang, Zeguo Sun, Shuai Sun, He Zhang, Jianwei Chen, Meiqi Lv, Kai Han, Xiaoxuan Tan, Jie Hu, Rui Guan, Yuanyuan Fu, Shanshan Liu, Xi Chen, Qiwu Xu, Yating Qin, Longqi Liu, Jie Bai, Ou Wang, Jingbo Tang, Haorong Lu, Zhouchun Shang, Bo Wang, Guohai Hu, Xia Zhao, Yan Zou, Ao Chen, Meihua Gong, Wenwei Zhang, Simon M.‐Y. Lee, Songhai Li, Junnian Liu, Zhen Li, Yishan Lu, Jamal S. M. Sabir, Mumdooh J. Sabir, Muhummadh Khan, Nahid H. Hajrah, Ye Yin, Karsten Kristiansen, Huanming Yang, Jian Wang, Xun Xu, Xin Liu. The first chromosome‐level genome for a marine mammal as a resource to study ecology and evolution[J]. MOLECULAR ECOLOGY RESOURCES, 2019, 19(4), 944-956.
Authors:  Guangyi Fan;  Yaolei Zhang;  Xiaochuan Liu;  Jiahao Wang;  Zeguo Sun; et al.
Favorite | TC[WOS]:24 TC[Scopus]:22  IF:5.5/7.8 | Submit date：2020/01/16
Ancestral Chromosomes  Aquatic Adaptations  Genome Assembly  Genomics/proteomics  Major Histocompatibility Complex  Mammals  Molecular Evolution  Sperm Whale  
A chromosome‐level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth Journal article
Yan He, Yue Chang, Lisui Bao, Mengjun Yu, Rui Li, Jingjing Niu, Guangyi Fan, Weihao Song, Inge Seim, Yating Qin, Xuemei Li, Jinxiang Liu, Xiangfu Kong, Meiting Peng, Minmin Sun, Mengya Wang, Jiangbo Qu, Xuangang Wang, Xiaobing Liu, Xiaolong Wu, Xi Zhao, Xuliang Wang, Yaolei Zhang, Jiao Guo, Yang Liu, Kaiqiang Liu, Yilin Wang, He Zhang, Longqi Liu, Mingyue Wang, Haiyang Yu, Xubo Wang, Jie Cheng, Zhigang Wang, Xun Xu, Jian Wang, Huanming Yang, Simon Ming‐Yuen Lee, Xin Liu, Quanqi Zhang, Jie Qi. A chromosome‐level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth[J]. MOLECULAR ECOLOGY RESOURCES, 2019, 19(5).
Authors:  Yan He;  Yue Chang;  Lisui Bao;  Mengjun Yu;  Rui Li; et al.
Favorite | TC[WOS]:48 TC[Scopus]:51  IF:5.5/7.8 | Submit date：2020/01/16
Astacin Metalloproteinase  Atac‐seq  Evolution  Rockfish Genome  Viviparity  Zona Pellucida  
New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes Journal article
Nikita I. Ershov, Viatcheslav A. Mordvinov, Egor B. Prokhortchouk, Mariya Y. Pakharukova, Konstantin V. Gunbin, Kirill Ustyantsev, Mikhail A. Genaev, Alexander G. Blinov, Alexander Mazur, Eugenia Boulygina, Svetlana Tsygankova, Ekaterina Khrameeva, Nikolay Chekanov, Guangyi Fan, An Xiao, He Zhang, Xun Xu, Huanming Yang, Victor Solovyev, Simon Ming-Yuen Lee, Xin Liu, Dmitry A. Afonnikov, Konstantin G. Skryabin. New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes[J]. BMC GENOMICS, 2019.
Authors:  Nikita I. Ershov;  Viatcheslav A. Mordvinov;  Egor B. Prokhortchouk;  Mariya Y. Pakharukova;  Konstantin V. Gunbin; et al.
Favorite | TC[WOS]:25 TC[Scopus]:33  IF:3.5/4.1 | Submit date：2020/01/16
Opisthorchiidae  Opisthorchis Felineus  Genome  Trans-splicing  Microintrons  Liver Flukes  Transcriptome  Metacercariae