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Public Perceptions of International Genetic Information Sharing for Biomedical Research in China: A Case Study of the Social Media Debate on the Article “A Pangenome Reference of 36 Chinese Populations” Journal article
Zhangyu, Wang, Meng, Wang, Li, Du. Public Perceptions of International Genetic Information Sharing for Biomedical Research in China: A Case Study of the Social Media Debate on the Article “A Pangenome Reference of 36 Chinese Populations”[J]. Human Genomics, 2024, 18(1), 86.
Authors:  Zhangyu, Wang;  Meng, Wang;  Li, Du
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:3.8/4.0 | Submit date：2024/08/29
Biosecurity  Chinese Gene-sequencing Data  International Genetic Data Sharing  Biomedical Research  Cross-border Genomics Research Collaboration  Public Attitudes  Public Education  Law Knowledge  Legal Regulation  Collective Culture  
An effective strategy for identifying autogenous regulation of transcription factors in filamentous fungi Journal article
Qin, Longguang, Guo, Shuhui, Li, Ang, Fan, Lu, Tan, Kaeling, Wong, Koon Ho. An effective strategy for identifying autogenous regulation of transcription factors in filamentous fungi[J]. Microbiology spectrum, 2023, 11(6), e02347-23.
Authors:  Qin, Longguang;  Guo, Shuhui;  Li, Ang;  Fan, Lu;  Tan, Kaeling; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:3.7/4.2 | Submit date：2024/01/02
Autogenous Regulation  Gene Regulation  Transcription Factors  
Carbon Catabolite Repression Governs Diverse Physiological Processes and Development in Aspergillus nidulans Journal article
Chen, Yingying, Dong, Liguo, Alam, Md Ashiqul, Pardeshi, Lakhansing, Miao, Zhengqiang, Wang, Fang, Tan, Kaeling, Hynes, Michael J., Kelly, Joan M., Wong, Koon Ho. Carbon Catabolite Repression Governs Diverse Physiological Processes and Development in Aspergillus nidulans[J]. mBio, 2022, 13(1), e03734-21.
Authors:  Chen, Yingying;  Dong, Liguo;  Alam, Md Ashiqul;  Pardeshi, Lakhansing;  Miao, Zhengqiang; et al.
Favorite | TC[WOS]:12 TC[Scopus]:15  IF:5.1/5.9 | Submit date：2022/05/17
Carbon Catabolite Repression  Carbon Metabolism  Fungal Physiology  Gene Regulation  Transcription Factor  
Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition Journal article
Wang, S. M.. Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition[J]. BMC Genomics, 2020, 842-854.
Authors:  Wang, S. M.
Favorite | TC[WOS]:3 TC[Scopus]:4  IF:3.5/4.1 | Submit date：2022/07/27
Gene Expression  Regulation  Promoter  Population  Ethnicity  Diversity  
Nanoparticle-based drug delivery systems for targeted epigenetics cancer therapy Review article
2020
Authors:  Chen, Fengqian;  Shi, Yunzhen;  Zhang, Jinming;  Liu, Qi
Favorite | TC[WOS]:8 TC[Scopus]:11  IF:3.0/3.3 | Submit date：2023/04/19
Bromodomain  Dna Methylation  Epigenetic Regulation/pathway/change  Gene Expression  Histone Modifications/methylation/ Acetylation  Nanoparticle/nanomedicine/nanotechnology  Non-coding Rna  
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context Journal article
Chiu H.-S., Somvanshi S., Patel E., Chen T.-W., Singh V.P., Zorman B., Patil S.L., Pan Y., Chatterjee S.S., Caesar-Johnson S.J., Demchok J.A., Felau I., Kasapi M., Ferguson M.L., Hutter C.M., Sofia H.J., Tarnuzzer R., Wang Z., Yang L., Zenklusen J.C., Zhang J.J., Chudamani S., Liu J., Lolla L., Naresh R., Pihl T., Sun Q., Wan Y., Wu Y., Cho J., DeFreitas T., Frazer S., Gehlenborg N., Getz G., Heiman D.I., Kim J., Lawrence M.S., Lin P., Meier S., Noble M.S., Saksena G., Voet D., Zhang H., Bernard B., Chambwe N., Dhankani V., Knijnenburg T., Kramer R., Leinonen K., Liu Y., Miller M., Reynolds S., Shmulevich I., Thorsson V., Zhang W., Akbani R., Broom B.M., Hegde A.M., Ju Z., Kanchi R.S., Korkut A., Li J., Liang H., Ling S., Liu W., Lu Y., Mills G.B., Ng K.-S., Rao A., Ryan M., Wang J., Weinstein J.N., Zhang J., Abeshouse A., Armenia J., Chakravarty D., Chatila W.K., de Bruijn I., Gao J., Gross B.E., Heins Z.J., Kundra R., La K., Ladanyi M., Luna A., Nissan M.G., Ochoa A., Phillips S.M., Reznik E., Sanchez-Vega F., Sander C., Schultz N., Sheridan R., Sumer S.O., Sun Y., Taylor B.S., Wang J., Zhang H., Anur P., Peto M., Spellman P., Benz C., Stuart J.M., Wong C.K., Yau C., Hayes D.N., Parker J.S., Wilkerson M.D., Ally A., Balasundaram M., Bowlby R., Brooks D., Carlsen R., Chuah E., Dhalla N., Holt R., Jones S.J.M., Kasaian K., Lee D., Ma Y., Marra M.A., Mayo M., Moore R.A., Mungall A.J., Mungall K., Robertson A.G., Sadeghi S., Schein J.E., Sipahimalani P., Tam A., Thiessen N., Tse K., Wong T., Berger A.C., Beroukhim R., Cherniack A.D., Cibulskis C., Gabriel S.B., Gao G.F., Ha G., Meyerson M., Schumacher S.E., Shih J., Kucherlapati M.H., Kucherlapati R.S., Baylin S., Cope L., Danilova L., Bootwalla M.S., Lai P.H., Maglinte D.T., Van Den Berg D.J., Weisenberger D.J., Auman J.T., Balu S., Bodenheimer T., Fan C., Hoadley K.A., Hoyle A.P., Jefferys S.R., Jones C.D., Meng S., Mieczkowski P.A., Mose L.E., Perou A.H., Perou C.M., Roach J., Shi Y., Simons J.V., Skelly T., Soloway M.G., Tan D., Veluvolu U., Fan H., Hinoue T., Laird P.W., Shen H., Zhou W., Bellair M., Chang K., Covington K., Creighton C.J., Dinh H., Doddapaneni H., Donehower L.A., Drummond J., Gibbs R.A., Glenn R., Hale W., Han Y., Hu J., Korchina V., Lee S., Lewis L., Li W., Liu X., Morgan M., Morton D., Muzny D., Santibanez J., Sheth M., Shinbrot E., Wang L., Wang M., Wheeler D.A., Xi L., Zhao F., Hess J., Appelbaum E.L., Bailey M., Cordes M.G., Ding L., Fronick C.C., Fulton L.A., Fulton R.S., Kandoth C., Mardis E.R., McLellan M.D., Miller C.A., Schmidt H.K., Wilson R.K., Crain D., Curley E., Gardner J., Lau K., Mallery D., Morris S., Paulauskis J., Penny R., Shelton C., Shelton T., Sherman M., Thompson E., Yena P., Bowen J., Gastier-Foster J.M., Gerken M., Leraas K.M., Lichtenberg T.M., Ramirez N.C., Wise L., Zmuda E., Corcoran N., Costello T., Hovens C., Carvalho A.L., de Carvalho A.C., Fregnani J.H., Longatto-Filho A., Reis R.M., Scapulatempo-Neto C., Silveira H.C.S., Vidal D.O., Burnette A., Eschbacher J., Hermes B., Noss A., Singh R., Anderson M.L., Castro P.D., Ittmann M., Huntsman D., Kohl B., Le X., Thorp R., Andry C., Duffy E.R., Lyadov V., Paklina O., Setdikova G., Shabunin A., Tavobilov M., McPherson C., Warnick R., Berkowitz R., Cramer D., Feltmate C., Horowitz N., Kibel A., Muto M., Raut C.P., Malykh A., Barnholtz-Sloan J.S., Barrett W., Devine K., Fulop J., Ostrom Q.T., Shimmel K., Wolinsky Y., Sloan A.E., De Rose A., Giuliante F., Goodman M., Karlan B.Y., Hagedorn C.H., Eckman J., Harr J., Myers J., Tucker K., Zach L.A., Deyarmin B., Hu H., Kvecher L., Larson C., Mural R.J., Somiari S., Vicha A., Zelinka T., Bennett J., Iacocca M., Rabeno B., Swanson P., Latour M., Lacombe L., Tetu B., Bergeron A., McGraw M., Staugaitis S.M., Chabot J., Hibshoosh H., Sepulveda A., Su T., Wang T., Potapova O., Voronina O., Desjardins L., Mariani O., Roman-Roman S., Sastre X., Stern M.-H., Cheng F., Signoretti S., Berchuck A., Bigner D., Lipp E., Marks J., McCall S., McLendon R., Secord A., Sharp A., Behera M., Brat D.J., Chen A., Delman K., Force S., Khuri F., Magliocca K., Maithel S., Olson J.J., Owonikoko T., Pickens A., Ramalingam S., Shin D.M., Sica G., Van Meir E.G., Zhang H., Eijckenboom W., Gillis A., Korpershoek E., Looijenga L., Oosterhuis W., Stoop H., van Kessel K.E., Zwarthoff E.C., Calatozzolo C., Cuppini L., Cuzzubbo S., DiMeco F., Finocchiaro G., Mattei L., Perin A., Pollo B., Chen C., Houck J., Lohavanichbutr P., Hartmann A., Stoehr C., Stoehr R., Taubert H., Wach S., Wullich B., Kycler W., Murawa D., Wiznerowicz M., Chung K., Edenfield W.J., Martin J., Baudin E., Bubley G., Bueno R., De Rienzo A., Richards W.G., Kalkanis S., Mikkelsen T., Noushmehr H., Scarpace L., Girard N., Aymerich M., Campo E., Gine E., Guillermo A.L., Van Bang N., Hanh P.T., Phu B.D., Tang Y., Colman H., Evason K., Dottino P.R., Martignetti J.A., Gabra H., Juhl H., Akeredolu T., Stepa S., Hoon D., Ahn K., Kang K.J., Beuschlein F., Breggia A., Birrer M., Bell D., Borad M., Bryce A.H., Castle E., Chandan V., Cheville J., Copland J.A., Farnell M., Flotte T., Giama N., Ho T., Kendrick M., Kocher J.-P., Kopp K., Moser C., Nagorney D., O'Brien D., O'Neill B.P., Patel T., Petersen G., Que F., Rivera M., Roberts L., Smallridge R., Smyrk T., Stanton M., Thompson R.H., Torbenson M., Yang J.D., Zhang L., Brimo F., Ajani J.A., Gonzalez A.M.A., Behrens C., Bondaruk J., Broaddus R., Czerniak B., Esmaeli B., Fujimoto J., Gershenwald J., Guo C., Lazar A.J., Logothetis C., Meric-Bernstam F., Moran C., Ramondetta L., Rice D., Sood A., Tamboli P., Thompson T., Troncoso P., Tsao A., Wistuba I., Carter C., Haydu L., Hersey P., Jakrot V., Kakavand H., Kefford R., Lee K., Long G., Mann G., Quinn M., Saw R., Scolyer R., Shannon K., Spillane A., Stretch J., Synott M., Thompson J., Wilmott J., Al-Ahmadie H., Chan T.A., Ghossein R., Gopalan A., Levine D.A., Reuter V., Singer S., Singh B., Tien N.V., Broudy T., Mirsaidi C., Nair P., Drwiega P., Miller J., Smith J., Zaren H., Park J.-W., Hung N.P., Kebebew E., Linehan W.M., Metwalli A.R., Pacak K., Pinto P.A., Schiffman M., Schmidt L.S., Vocke C.D., Wentzensen N., Worrell R., Yang H., Moncrieff M., Goparaju C., Melamed J., Pass H., Botnariuc N., Caraman I., Cernat M., Chemencedji I., Clipca A., Doruc S., Gorincioi G., Mura S., Pirtac M., Stancul I., Tcaciuc D., Albert M., Alexopoulou I., Arnaout A., Bartlett J., Engel J., Gilbert S., Parfitt J., Sekhon H., Thomas G., Rassl D.M., Rintoul R.C., Bifulco C., Tamakawa R., Urba W., Hayward N., Timmers H., Antenucci A., Facciolo F., Grazi G., Marino M., Merola R., de Krijger R., Gimenez-Roqueplo A.-P., Piche A., Chevalier S., McKercher G., Birsoy K., Barnett G., Brewer C., Farver C., Naska T., Pennell N.A., Raymond D., Schilero C., Smolenski K., Williams F., Morrison C., Borgia J.A., Liptay M.J., Pool M., Seder C.W., Junker K., Omberg L., Dinkin M., Manikhas G., Alvaro D., Bragazzi M.C., Cardinale V., Carpino G., Gaudio E., Chesla D., Cottingham S., Dubina M., Moiseenko F., Dhanasekaran R., Becker K.-F., Janssen K.-P., Slotta-Huspenina J., Abdel-Rahman M.H., Aziz D., Bell S., Cebulla C.M., Davis A., Duell R., Elder J.B., Hilty J., Kumar B., Lang J., Lehman N.L., Mandt R., Nguyen P., Pilarski R., Rai K., Schoenfield L., Senecal K., Wakely P., Hansen P., Lechan R., Powers J., Tischler A., Grizzle W.E., Sexton K.C., Kastl A., Henderson J., Porten S., Waldmann J., Fassnacht M., Asa S.L., Schadendorf D., Couce M., Graefen M., Huland H., Sauter G., Schlomm T., Simon R., Tennstedt P., Olabode O., Nelson M., Bathe O., Carroll P.R., Chan J.M., Disaia P., Glenn P., Kelley R.K., Landen C.N., Phillips J., Prados M., Simko J., Smith-McCune K., VandenBerg S., Roggin K., Fehrenbach A., Kendler A., Sifri S., Steele R., Jimeno A., Carey F., Forgie I., Mannelli M., Carney M., Hernandez B., Campos B., Herold-Mende C., Jungk C., Unterberg A., von Deimling A., Bossler A., Galbraith J., Jacobus L., Knudson M., Knutson T., Ma D., Milhem M., Sigmund R., Godwin A.K., Madan R., Rosenthal H.G., Adebamowo C., Adebamowo S.N., Boussioutas A., Beer D., Giordano T., Mes-Masson A.-M., Saad F., Bocklage T., Landrum L., Mannel R., Moore K., Moxley K., Postier R., Walker J., Zuna R., Feldman M., Valdivieso F., Dhir R., Luketich J., Pinero E.M.M., Quintero-Aguilo M., Carlotti C.G., Dos Santos J.S., Kemp R., Sankarankuty A., Tirapelli D., Catto J., Agnew K., Swisher E., Creaney J., Robinson B., Shelley C.S., Godwin E.M., Kendall S., Shipman C., Bradford C., Carey T., Haddad A., Moyer J., Peterson L., Prince M., Rozek L., Wolf G., Bowman R., Fong K.M., Yang I., Korst R., Rathmell W.K., Fantacone-Campbell J.L., Hooke J.A., Kovatich A.J., Shriver C.D., DiPersio J., Drake B., Govindan R., Heath S., Ley T., Van Tine B., Westervelt P., Rubin M.A., Lee J.I., Aredes N.D., Mariamidze A., Sood A.K., Gunaratne P.H., Sumazin P.. Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context[J]. Cell Reports, 2018, 23(1), 297-312.e12.
Authors:  Chiu H.-S.;  Somvanshi S.;  Patel E.;  Chen T.-W.;  Singh V.P.; et al.
Favorite | TC[WOS]:202 TC[Scopus]:198 | Submit date：2019/01/16
Cancer Gene  Interactome  Lncrna  Microrna  Modulation  Noncoding Rna  Pan-cancer  Regulation  Rna-binding Proteins  
Analysis of Genomes and Transcriptomes of Hepatocellular Carcinomas Identifies Mutations and Gene Expression Changes in the Transforming Growth Factor-β Pathway Journal article
Chen,Jian, Zaidi,Sobia, Rao,Shuyun, Chen,Jiun Sheng, Phan,Liem, Farci,Patrizia, Su,Xiaoping, Shetty,Kirti, White,Jon, Zamboni,Fausto, Wu,Xifeng, Rashid,Asif, Pattabiraman,Nagarajan, Mazumder,Raja, Horvath,Anelia, Wu,Ray Chang, Li,Shulin, Xiao,Cuiying, Deng,Chu Xia, Wheeler,David A., Mishra,Bibhuti, Akbani,Rehan, Mishra,Lopa. Analysis of Genomes and Transcriptomes of Hepatocellular Carcinomas Identifies Mutations and Gene Expression Changes in the Transforming Growth Factor-β Pathway[J]. Gastroenterology, 2018, 154(1), 195-210.
Authors:  Chen,Jian;  Zaidi,Sobia;  Rao,Shuyun;  Chen,Jiun Sheng;  Phan,Liem; et al.
Favorite | TC[WOS]:110 TC[Scopus]:112  IF:25.7/25.2 | Submit date：2020/09/16
Cosmic  Gene Regulation  Genetics  Immune Response  Liver Cancer  
Analysis of Genomes and Transcriptomes of Hepatocellular Carcinomas Identifies Mutations and Gene Expression Changes in the Transforming Growth Factor-β Pathway Journal article
Chen J., Zaidi S., Rao S., Chen J.-S., Phan L., Farci P., Su X., Shetty K., White J., Zamboni F., Wu X., Rashid A., Pattabiraman N., Mazumder R., Horvath A., Wu R.-C., Li S., Xiao C., Deng C.-X., Wheeler D.A., Mishra B., Akbani R., Mishra L.. Analysis of Genomes and Transcriptomes of Hepatocellular Carcinomas Identifies Mutations and Gene Expression Changes in the Transforming Growth Factor-β Pathway[J]. Gastroenterology, 2018, 154(1), 195-210.
Authors:  Chen J.;  Zaidi S.;  Rao S.;  Chen J.-S.;  Phan L.; et al.
Favorite | TC[WOS]:110 TC[Scopus]:112 | Submit date：2018/12/13
Cosmic  Gene Regulation  Genetics  Immune Response  Liver Cancer  
TFmapper: A Tool for Searching Putative Factors Regulating Gene Expression Using ChIP-seq Data Journal article
Zeng J., Li G.. TFmapper: A Tool for Searching Putative Factors Regulating Gene Expression Using ChIP-seq Data[J]. International journal of biological sciences, 2018, 14(12), 1724-1731.
Authors:  Zeng J.;  Li G.
Favorite | TC[WOS]:8 TC[Scopus]:8 | Submit date：2019/01/15
Chromatin Immunoprecipitation  Next-generation Sequencing  Regulation Of Gene Expression  
Genome-wide methylome and chromatin interactome identify abnormal enhancer to be risk factor of breast cancer Journal article
Wang, Yuan, Hao, Da-Peng, Li, Jing-Jing, Wang, Li, Di, Li-Jun. Genome-wide methylome and chromatin interactome identify abnormal enhancer to be risk factor of breast cancer[J]. ONCOTARGET, 2017, 8(27), 44705-44719.
Authors:  Wang, Yuan;  Hao, Da-Peng;  Li, Jing-Jing;  Wang, Li;  Di, Li-Jun
Favorite | TC[WOS]:6 TC[Scopus]:7  IF:5.168/5.312 | Submit date：2018/10/30
Enhancer Methylation  Breast Cancer  Chromatin Interaction  Polii Chia-pet  Gene Regulation