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Chromosome-level genome assembly of the glass catfish ( Kryptopterus vitreolus) reveals molecular clues to its transparent phenotype Journal article
Bian, Chao, Li, Rui Han, Ruan, Zhi Qiang, Chen, Wei Ting, Huang, Yu, Liu, Li Yue, Zhou, Hong Ling, Chong, Cheong Meng, Mu, Xi Dong, Shi, Qiong. Chromosome-level genome assembly of the glass catfish ( Kryptopterus vitreolus) reveals molecular clues to its transparent phenotype[J]. Zoological research, 2024, 45(5), 1027-1036.
Authors:  Bian, Chao;  Li, Rui Han;  Ruan, Zhi Qiang;  Chen, Wei Ting;  Huang, Yu; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:4.0/4.5 | Submit date：2024/09/03
Edn3b−/− Mutant  Glass Catfish  Transparent Phenotype  Whole-genome Sequencing  
Leveraging cfDNA Fragmentomic Features in a Stacked Ensemble Model for Early Detection of Esophageal Squamous Cell Carcinoma Journal article
Zichen Jiao, Xiaoqiang Zhang, Yulong Xuan, Xiaoming Shi, Zirui Zhang, Ao Yu, Ningyou Li, Shanshan Yang, Xiaofeng He, Gefei Zhao, Ruowei Yang, Jianqun Chen, Xuxiaochen Wu, Hua Bao, Fufeng Wang, Wei Ren, Hongwei Liang, Qihan Chen, Tao Wang. Leveraging cfDNA Fragmentomic Features in a Stacked Ensemble Model for Early Detection of Esophageal Squamous Cell Carcinoma[J]. Cell Reports Medicine, 2024, 5(8), 101664.
Authors:  Zichen Jiao;  Xiaoqiang Zhang;  Yulong Xuan;  Xiaoming Shi;  Zirui Zhang; et al.
Favorite | TC[WOS]:0 TC[Scopus]:1  IF:11.7/0 | Submit date：2024/07/30
Esophageal Cancer  Early Detection  Cell-free Dna  Whole-genome Sequencing  Machine Learning  
A Food Poisoning Caused by Salmonella Enterica (S. Enteritidis) ST11 Carrying Multi-Antimicrobial Resistance Genes in 2019, China Journal article
Zhang, Zhiyi, Li, Baisheng, Huang, Huitao, Fang, Yanmei, Yang, Wenqiang. A Food Poisoning Caused by Salmonella Enterica (S. Enteritidis) ST11 Carrying Multi-Antimicrobial Resistance Genes in 2019, China[J]. Infection and Drug Resistance, 2024, 17, 1751-1762.
Authors:  Zhang, Zhiyi;  Li, Baisheng;  Huang, Huitao;  Fang, Yanmei;  Yang, Wenqiang
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:2.9/3.6 | Submit date：2024/06/05
Antimicrobial Resistance  Multi-locus Sequence Typing  Salmonella Food Poisoning  Sequence Type 11  Whole-genome Sequencing  
Single cell analyses of cancer cells identified two regulatorily and functionally distinct categories in differentially expressed genes among tumor subclones Journal article
Cao, Wei, Wang, Xuefei, Luo, Kaiwen, Li, Yang, Sun, Jiahong, Fu, Ruqing, Zhang, Qi, Hong, Ni, Cheung, Edwin, Jin, Wenfei. Single cell analyses of cancer cells identified two regulatorily and functionally distinct categories in differentially expressed genes among tumor subclones[J]. Heliyon, 2024, 10(6), e28071.
Authors:  Cao, Wei;  Wang, Xuefei;  Luo, Kaiwen;  Li, Yang;  Sun, Jiahong; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:3.4/3.9 | Submit date：2024/04/02
Colorectal Cancer  Single Cell Rna Sequencing  Single Cell Whole Genome Sequencing  Copy Number Variations  Differentially Expressed Gene  Cell-cell Communication  
Chromosome-level genome assembly of Welwitschia mirabilis, a unique Namib Desert species Journal article
Han, Yuwei, Zhang, Weixiong, Zhou, Botong, Zeng, Peng, Tian, Zunzhe, Cai, Jing. Chromosome-level genome assembly of Welwitschia mirabilis, a unique Namib Desert species[J]. Molecular Ecology Resources, 2022, 22(1), 391-403.
Authors:  Han, Yuwei;  Zhang, Weixiong;  Zhou, Botong;  Zeng, Peng;  Tian, Zunzhe; et al.
Favorite | TC[WOS]:3 TC[Scopus]:3  IF:5.5/7.8 | Submit date：2022/02/21
Chromosome-level Genome Assembly  Gene Family  Genome Evolution  Positively Selected Genes  Welwitschia Mirabilis  Whole-genome Sequencing  
Secondary metabolite production potential of mangrove-derived streptomyces olivaceus Journal article
Hu, Dini, Lee, Simon Ming Yuen, Li, Kai, Mok, Kai Meng. Secondary metabolite production potential of mangrove-derived streptomyces olivaceus[J]. Marine Drugs, 2021, 19(6), 332.
Authors:  Hu, Dini;  Lee, Simon Ming Yuen;  Li, Kai;  Mok, Kai Meng
Favorite | TC[WOS]:1 TC[Scopus]:3  IF:4.9/5.2 | Submit date：2021/12/08
Actinobacteria  Mangroves  Mass Spectrometry  Streptomyces  Validamycin  Whole Genome Sequencing  
Exploring the Potential of Antibiotic Production From Rare Actinobacteria by Whole-Genome Sequencing and Guided MS/MS Analysis Journal article
Hu,Dini, Sun,Chenghang, Jin,Tao, Fan,Guangyi, Mok,Kai Meng, Li,Kai, Lee,Simon Ming Yuen. Exploring the Potential of Antibiotic Production From Rare Actinobacteria by Whole-Genome Sequencing and Guided MS/MS Analysis[J]. Frontiers in Microbiology, 2020, 11, 1540.
Authors:  Hu,Dini;  Sun,Chenghang;  Jin,Tao;  Fan,Guangyi;  Mok,Kai Meng; et al.
Favorite | TC[WOS]:13 TC[Scopus]:15  IF:4.0/5.1 | Submit date：2021/03/01
Antibiotics  Mangroves  Mass Spectrometry  Rare Actinobacteria  Whole-genome Sequencing  
Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias Journal article
Bian, Chao, Li, Jia, Lin, Xueqiang, Chen, Xiyang, Yi, Yunhai, You, Xinxin, Zhang, Yiping, Lv, Yunyun, Shi, Qiong. Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias[J]. Marine Drugs, 2019, 17(7).
Authors:  Bian, Chao;  Li, Jia;  Lin, Xueqiang;  Chen, Xiyang;  Yi, Yunhai; et al.
Favorite | TC[WOS]:21 TC[Scopus]:21  IF:4.9/5.2 | Submit date：2022/05/23
Antimicrobial Peptide  Blue Tilapia (Oreochromis Aureus)  Genome Annotation  Genome Assembly  Whole Genome Sequencing  
Identification of candidate genes for the plateau adaptation of a Tibetan amphipod, Gammarus lacustris, through integration of genome and transcriptome sequencing Journal article
Jin, Shubo, Bian, Chao, Jiang, Sufei, Sun, Shengming, Xu, Lei, Xiong, Yiwei, Qiao, Hui, Zhang, Wenyi, You, Xinxin, Li, Jia, Gong, Yongsheng, Ma, Bo, Shi, Qiong, Fu, Hongtuo. Identification of candidate genes for the plateau adaptation of a Tibetan amphipod, Gammarus lacustris, through integration of genome and transcriptome sequencing[J]. Frontiers in Genetics, 2019, 10(FEB).
Authors:  Jin, Shubo;  Bian, Chao;  Jiang, Sufei;  Sun, Shengming;  Xu, Lei; et al.
Favorite | TC[WOS]:9 TC[Scopus]:9  IF:2.8/3.3 | Submit date：2022/05/23
Comparative Transcriptome  Full-length Transcriptome  Gammarus Lacustris  Gammarus Pisinnus  Plateau Adaptation  Whole-genome Sequencing  
Oncogenic Signaling Pathways in The Cancer Genome Atlas Journal article
Sanchez-Vega F., Mina M., Armenia J., Chatila W.K., Luna A., La K.C., Dimitriadoy S., Liu D.L., Kantheti H.S., Saghafinia S., Chakravarty D., Daian F., Gao Q., Bailey M.H., Liang W.-W., Foltz S.M., Shmulevich I., Ding L., Heins Z., Ochoa A., Gross B., Gao J., Zhang H., Kundra R., Kandoth C., Bahceci I., Dervishi L., Dogrusoz U., Zhou W., Shen H., Laird P.W., Way G.P., Greene C.S., Liang H., Xiao Y., Wang C., Iavarone A., Berger A.H., Bivona T.G., Lazar A.J., Hammer G.D., Giordano T., Kwong L.N., McArthur G., Huang C., Tward A.D., Frederick M.J., McCormick F., Meyerson M., Caesar-Johnson S.J., Demchok J.A., Felau I., Kasapi M., Ferguson M.L., Hutter C.M., Sofia H.J., Tarnuzzer R., Wang Z., Yang L., Zenklusen J.C., Zhang J.J., Chudamani S., Liu J., Lolla L., Naresh R., Pihl T., Sun Q., Wan Y., Wu Y., Cho J., DeFreitas T., Frazer S., Gehlenborg N., Getz G., Heiman D.I., Kim J., Lawrence M.S., Lin P., Meier S., Noble M.S., Saksena G., Voet D., Zhang H., Bernard B., Chambwe N., Dhankani V., Knijnenburg T., Kramer R., Leinonen K., Liu Y., Miller M., Reynolds S., Shmulevich I., Thorsson V., Zhang W., Akbani R., Broom B.M., Hegde A.M., Ju Z., Kanchi R.S., Korkut A., Li J., Liang H., Ling S., Liu W., Lu Y., Mills G.B., Ng K.-S., Rao A., Ryan M., Wang J., Weinstein J.N., Zhang J., Abeshouse A., Armenia J., Chakravarty D., Chatila W.K., de Bruijn I., Gao J., Gross B.E., Heins Z.J., Kundra R., La K., Ladanyi M., Luna A., Nissan M.G., Ochoa A., Phillips S.M., Reznik E., Sanchez-Vega F., Sander C., Schultz N., Sheridan R., Sumer S.O., Sun Y., Taylor B.S., Wang J., Zhang H., Anur P., Peto M., Spellman P., Benz C., Stuart J.M., Wong C.K., Yau C., Hayes D.N., Parker J.S., Wilkerson M.D., Ally A., Balasundaram M., Bowlby R., Brooks D., Carlsen R., Chuah E., Dhalla N., Holt R., Jones S.J.M., Kasaian K., Lee D., Ma Y., Marra M.A., Mayo M., Moore R.A., Mungall A.J., Mungall K., Robertson A.G., Sadeghi S., Schein J.E., Sipahimalani P., Tam A., Thiessen N., Tse K., Wong T., Berger A.C., Beroukhim R., Cherniack A.D., Cibulskis C., Gabriel S.B., Gao G.F., Ha G., Meyerson M., Schumacher S.E., Shih J., Kucherlapati M.H., Kucherlapati R.S., Baylin S., Cope L., Danilova L., Bootwalla M.S., Lai P.H., Maglinte D.T., Van Den Berg D.J., Weisenberger D.J., Auman J.T., Balu S., Bodenheimer T., Fan C., Hoadley K.A., Hoyle A.P., Jefferys S.R., Jones C.D., Meng S., Mieczkowski P.A., Mose L.E., Perou A.H., Perou C.M., Roach J., Shi Y., Simons J.V., Skelly T., Soloway M.G., Tan D., Veluvolu U., Fan H., Hinoue T., Laird P.W., Shen H., Zhou W., Bellair M., Chang K., Covington K., Creighton C.J., Dinh H., Doddapaneni H., Donehower L.A., Drummond J., Gibbs R.A., Glenn R., Hale W., Han Y., Hu J., Korchina V., Lee S., Lewis L., Li W., Liu X., Morgan M., Morton D., Muzny D., Santibanez J., Sheth M., Shinbrot E., Wang L., Wang M., Wheeler D.A., Xi L., Zhao F., Hess J., Appelbaum E.L., Bailey M., Cordes M.G., Ding L., Fronick C.C., Fulton L.A., Fulton R.S., Kandoth C., Mardis E.R., McLellan M.D., Miller C.A., Schmidt H.K., Wilson R.K., Crain D., Curley E., Gardner J., Lau K., Mallery D., Morris S., Paulauskis J., Penny R., Shelton C., Shelton T., Sherman M., Thompson E., Yena P., Bowen J., Gastier-Foster J.M., Gerken M., Leraas K.M., Lichtenberg T.M., Ramirez N.C., Wise L., Zmuda E., Corcoran N., Costello T., Hovens C., Carvalho A.L., de Carvalho A.C., Fregnani J.H., Longatto-Filho A., Reis R.M., Scapulatempo-Neto C., Silveira H.C.S., Vidal D.O., Burnette A., Eschbacher J., Hermes B., Noss A., Singh R., Anderson M.L., Castro P.D., Ittmann M., Huntsman D., Kohl B., Le X., Thorp R., Andry C., Duffy E.R., Lyadov V., Paklina O., Setdikova G., Shabunin A., Tavobilov M., McPherson C., Warnick R., Berkowitz R., Cramer D., Feltmate C., Horowitz N., Kibel A., Muto M., Raut C.P., Malykh A., Barnholtz-Sloan J.S., Barrett W., Devine K., Fulop J., Ostrom Q.T., Shimmel K., Wolinsky Y., Sloan A.E., De Rose A., Giuliante F., Goodman M., Karlan B.Y., Hagedorn C.H., Eckman J., Harr J., Myers J., Tucker K., Zach L.A., Deyarmin B., Hu H., Kvecher L., Larson C., Mural R.J., Somiari S., Vicha A., Zelinka T., Bennett J., Iacocca M., Rabeno B., Swanson P., Latour M., Lacombe L., Tetu B., Bergeron A., McGraw M., Staugaitis S.M., Chabot J., Hibshoosh H., Sepulveda A., Su T., Wang T., Potapova O., Voronina O., Desjardins L., Mariani O., Roman-Roman S., Sastre X., Stern M.-H., Cheng F., Signoretti S., Berchuck A., Bigner D., Lipp E., Marks J., McCall S., McLendon R., Secord A., Sharp A., Behera M., Brat D.J., Chen A., Delman K., Force S., Khuri F., Magliocca K., Maithel S., Olson J.J., Owonikoko T., Pickens A., Ramalingam S., Shin D.M., Sica G., Van Meir E.G., Zhang H., Eijckenboom W., Gillis A., Korpershoek E., Looijenga L., Oosterhuis W., Stoop H., van Kessel K.E., Zwarthoff E.C., Calatozzolo C., Cuppini L., Cuzzubbo S., DiMeco F., Finocchiaro G., Mattei L., Perin A., Pollo B., Chen C., Houck J., Lohavanichbutr P., Hartmann A., Stoehr C., Stoehr R., Taubert H., Wach S., Wullich B., Kycler W., Murawa D., Wiznerowicz M., Chung K., Edenfield W.J., Martin J., Baudin E., Bubley G., Bueno R., De Rienzo A., Richards W.G., Kalkanis S., Mikkelsen T., Noushmehr H., Scarpace L., Girard N., Aymerich M., Campo E., Gine E., Guillermo A.L., Van Bang N., Hanh P.T., Phu B.D., Tang Y., Colman H., Evason K., Dottino P.R., Martignetti J.A., Gabra H., Juhl H., Akeredolu T., Stepa S., Hoon D., Ahn K., Kang K.J., Beuschlein F., Breggia A., Birrer M., Bell D., Borad M., Bryce A.H., Castle E., Chandan V., Cheville J., Copland J.A., Farnell M., Flotte T., Giama N., Ho T., Kendrick M., Kocher J.-P., Kopp K., Moser C., Nagorney D., O'Brien D., O'Neill B.P., Patel T., Petersen G., Que F., Rivera M., Roberts L., Smallridge R., Smyrk T., Stanton M., Thompson R.H., Torbenson M., Yang J.D., Zhang L., Brimo F., Ajani J.A., Gonzalez A.M.A., Behrens C., Bondaruk J., Broaddus R., Czerniak B., Esmaeli B., Fujimoto J., Gershenwald J., Guo C., Lazar A.J., Logothetis C., Meric-Bernstam F., Moran C., Ramondetta L., Rice D., Sood A., Tamboli P., Thompson T., Troncoso P., Tsao A., Wistuba I., Carter C., Haydu L., Hersey P., Jakrot V., Kakavand H., Kefford R., Lee K., Long G., Mann G., Quinn M., Saw R., Scolyer R., Shannon K., Spillane A., Stretch J., Synott M., Thompson J., Wilmott J., Al-Ahmadie H., Chan T.A., Ghossein R., Gopalan A., Levine D.A., Reuter V., Singer S., Singh B., Tien N.V., Broudy T., Mirsaidi C., Nair P., Drwiega P., Miller J., Smith J., Zaren H., Park J.-W., Hung N.P., Kebebew E., Linehan W.M., Metwalli A.R., Pacak K., Pinto P.A., Schiffman M., Schmidt L.S., Vocke C.D., Wentzensen N., Worrell R., Yang H., Moncrieff M., Goparaju C., Melamed J., Pass H., Botnariuc N., Caraman I., Cernat M., Chemencedji I., Clipca A., Doruc S., Gorincioi G., Mura S., Pirtac M., Stancul I., Tcaciuc D., Albert M., Alexopoulou I., Arnaout A., Bartlett J., Engel J., Gilbert S., Parfitt J., Sekhon H., Thomas G., Rassl D.M., Rintoul R.C., Bifulco C., Tamakawa R., Urba W., Hayward N., Timmers H., Antenucci A., Facciolo F., Grazi G., Marino M., Merola R., de Krijger R., Gimenez-Roqueplo A.-P., Piche A., Chevalier S., McKercher G., Birsoy K., Barnett G., Brewer C., Farver C., Naska T., Pennell N.A., Raymond D., Schilero C., Smolenski K., Williams F., Morrison C., Borgia J.A., Liptay M.J., Pool M., Seder C.W., Junker K., Omberg L., Dinkin M., Manikhas G., Alvaro D., Bragazzi M.C., Cardinale V., Carpino G., Gaudio E., Chesla D., Cottingham S., Dubina M., Moiseenko F., Dhanasekaran R., Becker K.-F., Janssen K.-P., Slotta-Huspenina J., Abdel-Rahman M.H., Aziz D., Bell S., Cebulla C.M., Davis A., Duell R., Elder J.B., Hilty J., Kumar B., Lang J., Lehman N.L., Mandt R., Nguyen P., Pilarski R., Rai K., Schoenfield L., Senecal K., Wakely P., Hansen P., Lechan R., Powers J., Tischler A., Grizzle W.E., Sexton K.C., Kastl A., Henderson J., Porten S., Waldmann J., Fassnacht M., Asa S.L., Schadendorf D., Couce M., Graefen M., Huland H., Sauter G., Schlomm T., Simon R., Tennstedt P., Olabode O., Nelson M., Bathe O., Carroll P.R., Chan J.M., Disaia P., Glenn P., Kelley R.K., Landen C.N., Phillips J., Prados M., Simko J., Smith-McCune K., VandenBerg S., Roggin K., Fehrenbach A., Kendler A., Sifri S., Steele R., Jimeno A., Carey F., Forgie I., Mannelli M., Carney M., Hernandez B., Campos B., Herold-Mende C., Jungk C., Unterberg A., von Deimling A., Bossler A., Galbraith J., Jacobus L., Knudson M., Knutson T., Ma D., Milhem M., Sigmund R., Godwin A.K., Madan R., Rosenthal H.G., Adebamowo C., Adebamowo S.N., Boussioutas A., Beer D., Giordano T., Mes-Masson A.-M., Saad F., Bocklage T., Landrum L., Mannel R., Moore K., Moxley K., Postier R., Walker J., Zuna R., Feldman M., Valdivieso F., Dhir R., Luketich J., Pinero E.M.M., Quintero-Aguilo M., Carlotti C.G., Dos Santos J.S., Kemp R., Sankarankuty A., Tirapelli D., Catto J., Agnew K., Swisher E., Creaney J., Robinson B., Shelley C.S., Godwin E.M., Kendall S., Shipman C., Bradford C., Carey T., Haddad A., Moyer J., Peterson L., Prince M., Rozek L., Wolf G., Bowman R., Fong K.M., Yang I., Korst R., Rathmell W.K., Fantacone-Campbell J.L., Hooke J.A., Kovatich A.J., Shriver C.D., DiPersio J., Drake B., Govindan R., Heath S., Ley T., Van Tine B., Westervelt P., Rubin M.A., Lee J.I., Aredes N.D., Mariamidze A., Van Allen E.M., Cherniack A.D., Ciriello G., Sander C., Schultz N.. Oncogenic Signaling Pathways in The Cancer Genome Atlas[J]. Cell, 2018, 173(2), 321-337.e10.
Authors:  Sanchez-Vega F.;  Mina M.;  Armenia J.;  Chatila W.K.;  Luna A.; et al.
Favorite | TC[WOS]:1937 TC[Scopus]:1976 | Submit date：2019/01/16
Cancer Genome Atlas  Cancer Genomics  Combination Therapy  Pan-cancer  Pancanatlas  Precision Oncology  Signaling Pathways  Tcga  Therapeutics  Whole Exome Sequencing